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Reto's Buffers & Media Book

2019.4.22
08-15 Buffer

Compound
MW
Final concentration

200 ml

Glycine75.07 
0.1 M

1.5 g

1 M MgCl2
 10 mM

2 ml

KOH
to pH 9

H2O

to 200 ml

A

Acetic Acid 1 M

Compound
MW
Final concentration

50 ml

Acetic Acid 98% (~17 M)
1 M

3 ml

H2O

to 50 ml


Acrylamide/Bisacrylamide

Compound
MW
Final concentration

500 ml

Acrylamide
71.08
20 %

100 g

Bisacrylamide
154.17
0.8 %

4 g

H2O

to 500 ml



Alkaline Lysis Buffer A

Compound
MW
Final concentration

500 ml

Glucose
180
50 mM

4.5 g

Tris
121
25 mM

1.5 g

EDTA 0.25 M
10 mM

20 ml

H2O

to 450 ml

Adjust pH 8.0 with HCl


H2O, Autoclave, store at 4°C

to 500 ml



Alkaline Lysis Solution 1

Compound
MW
Final concentration

100 ml

Lysozyme
0.2 mg/ml

0.02 g

Alkaline Lysis Buffer A

to 100 ml



Alkaline Lysis Solution 2

Compound
MW
Final concentration

50 ml

SDS 20 %
1 %

2.5 ml

NaOH 10 M
0.2 M

1 ml

H2O

to 50 ml



Alkaline Lysis Solution 3

Compound
MW
Final concentration

50 ml

KAc
98
3 M

14.7 g

Acetic Acid 100 %
11.5 %

5.75 ml

H2O

to 50 ml



Amido Black

Compound
MW
Final concentration

100 ml

Amidoblack
98
0.1 %

0.1 g

Acetic Acid 100 %
7.5 %

7.5 ml

Methanol
20 % (v/v)

20 ml

H2O

to 100 ml



Aminoacid Concentration in Media

Constituent
Final mg/l
Stock

ml stock for 1 liter medium

Adenine sulfate
20
2 mg/ml
10
Uracil
20
2 mg/ml
10
L-tryptophan
20
 2 mg/ml
10
L-histidine-HCl
20
2 mg/ml
10
L-arginine-HCl
20
2 mg/ml
10
L-methionine
20
2 mg/ml
10
L-tyrosine
30
3 mg/ml
10
L-leucine
30
3 mg/ml
10
L-isoleucine
30
3 mg/ml
10
L-lysine-HCl
30
3 mg/ml
10
L-phenylalanine
50
5 mg/ml
10
L-glutamic acid
100
10 mg/ml
10
L-aspartic acid
100
10 mg/ml
10
L-valine
150
15 mg/ml
10
L-threonine
200
20 mg/ml
10
L-serine
400
40 mg/ml
10


3-Aminophtalhydrazide 250 mM

Compound
MW
Final concentration

10 ml

3-Aminophtalhydrazide
177
250 mM

442 mg

H2O

to 10 ml



Ammoniummolybdate 4.2 %

Compound
MW
Final concentration

50 ml

Ammoniummolybdate x 4H2O
236
4.2 %

2.1 g

H2O

to 30 ml

HCl fuming 37 % (~12 M)
4 M

16.7 ml

H2O

to 50 ml


Ampicillin 20 mg/ml pH 8.0

Compound
MW
Final concentration

15 ml

Ampicillin
349.4
20 mg/ml

300 mg

H2O

to 10 ml

Adjust pH 8.0 with NaOH


H2O, Filter sterilize

to 15 ml


Antibiotics

Antibiotics
mg/ml on plates
Action
Resistance Mechanism
Ampicillin
50
Inhibits cell wall synthesis by inhibiting formation of the peptidoglycan crosslinkb-lactamase (286 aa) is secreted into the periplasm and cleaves lactam antibiotic
Chloramphenicol
20
Inhibits protein synthesis by interacting with the 50S ribosomal subunit and inhibiting the peptidyltransferase reaction.216 aa protein cytoplasmic protein which acetylates chloramphenicol
Kanamycin  
Neomycin
30
Inhibits translocation and elicits miscoding by binding to the 30S ribosomal subunit.256 aa aminoglycoside phosphotransferase phosphorylates kanamycin, neomycin, etc.
Tetracycline
12
Inhibits protein synthesis by preventing binding of aminoacyl tRNA to the ribosome A site.428 aa membrane protein catalyzing efflux of tetracyclin, probably by a cation symport mechanism.


APS

Compound
MW
Final concentration

10 ml

Ammoniumpersulfate
228.2
10 %

1 g

H2O, store at 4°C

to 10 ml


Ascorbate 0.5 M pH 6.0

Compound
MW
Final concentration

50 ml

L-Ascorbic acid
176.1
0.5 M

4.4 g

H2O

to 22 ml

Adjust pH 6.0 with NaOH 1 M


H2O

to 50 ml


Asolectin (fatty acid free) 50 mg/ml

Compound
MW
Final concentration

50 ml

Asolectin (aceton treated)
50 mg/ml

2.5 g

Diethylether, store at -20°C

to 50 ml


ATP 200 mM

Compound
MW
Final concentration

10 ml

Adenosine-5'-Triphosphate
551.1
200 mM

1.102 g

H2O

to 5 ml

Adjust pH 6.5 with NaOH 1 M


H2O, store at -20°C

to 10 ml


ATP Regenerating System (ARS) 40x

Compound
MW
Final concentration

1 ml

Phospoenolpyruvate (PEP)
208.0
20 mM

4.16 mg

Pyruvate Kinase (PK) 5 U/ml
0.1 U/ml

20 ml

H2O, store at 4°C

to 1 ml

B

BALP Protease Inhibitor Mix 21x

Compound
MW
Final concentration

10 ml

Aprotinin 1.5 mg/ml
0.486 g/l

3.24 ml

PepstatinA 1 mg/ml in DMSO
686
0.131 g/l

1.3 ml

Leupeptin x 1/2H2SO4 10.5 mM
476
0.04 mM

37.5 ml

4-Aminobenzamidine x 2HCl
208
190 mM

396 mg

H2O

to 10 ml


Bis-Tris 1M pH7.0

Compound
MW
Final concentration

100 ml

Bis-Tris
209.2
1 M

20.9 g

H2O

to 50 ml

Adjust pH 7.0 with HCl


H2O

to 100 ml


Brij/Doc pH 8.0

Compound
MW
Final concentration

100 ml

EDTA 0.25 M
1 mM

0.4 ml

Tris 1 M pH 8.0
10 mM

1 ml

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