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• Human Allele Database 1.0
  Program for finding ancestral and consensus alleles for human SNPs

• ChipTester 2.0
  Program that locates all possible APEX primer interactions in PCR products

• GenomeTester 1.3
  Fast e-PCR program for the prediction of PCR products from the genomic DNA

• GT4MultiPLX 1.0
  Calculates potential PCR products for multiplexed PCR primers

• MAPHDesigner 1.2
  Program that allows design of primers and probes for genome copy number detection (MAPH/CGH microarrays)

• MPrimer3 Web
  Program for designing PCR primers and oligos. It is a modification of known Primer3 that is able to use the lowercase-masked sequence for primer design.

• MultiPLX 2.0
  A tool for grouping PCR primers by various compatibility criteria

• OligoTM 1.0
  Program for calculation oligo melting temperature and GC content

• R2-Bin Visualizer 1.0
  A visualization tool for r2 -bin based tagSNP selection

• SLICSel 1.1
  A thermodynamics-based program for designing specific oligonucleotide probes

• SNPmasker 1.0
  Automatic masking of SNPs and repeats across eukaryotic genomes

• qRTDesigner 1.2
  Program for designing primers for large-scale real-time quantitative PCR assays

• EMBOSS
  Public tools for sequence analysis