PC/GENE: Sequence Comparisons and Homologies
Generally, the purpose of aligning sequences is to determine the phylogenetic relationship between the sequences and/or to identify conserved regions that may represent biologically functional domains. The PC/GENE package contains three programs that help to determine the optimal alignment of nucleic acid and protein sequences. NALIGN will align two nucleic acid sequences, and PALIGN will align two protein sequences. Both programs will impose gaps, within user-defined constraints, to optimize the alignments. In addition, PALIGN will allow partial weight for similar amino acids. The third program, CLUSTAL, will align both nucleic acid and protein sequences. CLUSTAL can align up to 25 sequences, and in addition to showing the sequence alignments, CLUSTAL will draw a dendrogram to illustrate the phylogenetic relationship between the aligned sequences.
- The Sleeping Beauty Transposon Toolbox
- The JC Virus-Like Particle Overlay Assay
- Staden: Comparing Sequences
- In Vitro Shuttle Mutagenesis Using Engineered Mariner Transposons
- Polyacrylamide Temperature Gradient Gel Electrophoresis
- Cytokine Gene Polymorphisms: Methods of Detection and Biological Significance
- Production of Retroviral Vectors for Clinical Use
- Solvoplex Synthetic Vector for Intrapulmonary Gene Delivery: Preparation and Use
- Linkage Disequilibrium Maps and Location Databases
- In Vivo Electroporation-Mediated Gene Delivery to the Beating Heart